Document Type
Research Data
Publication Date
2017
Abstract
We analyzed the recently available whole genome sequences from two thraustochytrids (Aurantiochytrium limacinum ATCC MYA-1381, Schizochytrium aggregatum ATCC 28209) and one aplanochytrid (Aplanochytrium PBS07) We then calculated the genome-wide relative synonymous codon usage, codon frequencies and GC content for predicted coding sequences from each of the three species. We compared these to other stramenopiles: the diatoms Phaeodactylum tricornutum and Thalassiosira pseudonana, and the oomycete Phytophthora sojae, as well as to the ascomycete fungus Saccharomyces cerevisiae. For further description, see: https://you.stonybrook.edu/labyrinthulomycetes/coding-properties/ For code used to generate these calculations, see: https://www.protocols.io/view/labyrinthulomycete-genome-codon-usage-calculation-hgyb3xw
Recommended Citation
Rest, Joshua and Collier, Jackie L., "Labyrinthulomycete Genomes Codon Usage" (2017). Interdisciplinary Research Data. 2.
https://commons.library.stonybrook.edu/inter-data/2