Document Type
Research Data
Publication Date
2017
Keywords
molecular genetic tools; transcription regulation
Abstract
To develop broadly useful methods for the genetic manipulation of Labyrinthulomycetes (a diverse group of ubiquitous osmoheterotrophic marine protists), it is essential to understand the similarities and differences in regulation of gene expression among them. Toward this end we have used FIMO from the MEME suite (http://meme-suite.org/doc/fimo.html) to identify potential transcription factor binding sites in each of the three available genome sequences: Aplanochytrium kerguelense PBS07, Schizochytrium aggregatum ATCC 28209, and Aurantiochytrium limacinum ATCC MYA-1381
Recommended Citation
Collier, Jackie L. and Rest, Joshua, "Scanning Labyrinthulomycete Genomes for Yeast Transcription Factor Binding Site Motifs" (2017). Interdisciplinary Research Data. 1.
https://commons.library.stonybrook.edu/inter-data/1
Schizochytrium_fimo.txt (110861 kB)
Aplanochytrium_fimo.txt (55928 kB)
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Bioinformatics Commons, Microbial Physiology Commons, Other Genetics and Genomics Commons, Other Microbiology Commons